File path | resistanceGeno1.fasta |
Sequence data format | Consensus (FASTA) |
Sequence ID | EF407428 |
Report generation date | 10/09/2019 |
Identified as hepatitis C? | Yes |
Genotype | 1 |
Subtype | 1a |
Closest reference sequence | M62321 |
Virus protein | Polymorphism | Genotype / Subtype | Resisted drug | Resistance category1 | EC50 log fold change in vitro | Clinical trials / study cohort | Associated drug regimens | Found at baseline? | Treatment-emergent? | Reference |
---|---|---|---|---|---|---|---|---|---|---|
NS3 | K/Q80K | Subtype 1a | grazoprevir | II | - | Pooled study of multiple trials: C-EDGE CO-INFECTION; C-EDGE TE; C-EDGE TN; C-SALVAGE; C-SURFER; C-WORTHy | EBR/GZR | Yes | No | Komatsu et al., 2017 [1] |
- | C-EDGE TE | EBR/GZR; EBR/GZR/RBV | Yes | No | Kwo et al., 2017 [2] | |||||
0.80 | - | - | - | - | Guo et al., 2017 [3] | |||||
1.70 | - | - | - | - | Howe et al., 2014 [4] | |||||
- | C-WORTHy | EBR/GZR; EBR/GZR/RBV | Yes | No | Lawitz et al., 2015 [5] | |||||
1.10 | - | - | - | - | Lahser et al., 2016 [6] | |||||
- | C-EDGE CO-INFECTION | EBR/GZR | Yes | No | Rockstroh et al., 2015 [7] | |||||
- | Pooled study of multiple trials: NCT01710501; NCT01716156 | IFN/RBV/GZR | Yes | No | Bonsall et al., 2018 [8] | |||||
paritaprevir | II | - | Pooled study of multiple trials: PEARL-IV; SAPPHIRE-II; TURQUOISE-II | PTV/r/OBV/DSV; PTV/r/OBV/DSV/RBV | Yes | No | Sarrazin et al., 2016 [9] | |||
3 | - | - | - | - | Pilot-Matias et al., 2015 [10] | |||||
2 | - | - | - | - | Pham et al., 2019 [11] | |||||
voxilaprevir | II | - | Pooled study of multiple trials: POLARIS-1; POLARIS-4 | SOF/VEL/VOX | Yes | No | Sarrazin et al., 2017 [12] | |||
- | Pooled study of multiple trials: POLARIS-2; POLARIS-3 | SOF/VEL/VOX | Yes | No | Wyles, et al., 2017 [13] | |||||
NS3 | K/Q80K+I132I | Subtype 1a | grazoprevir | II | - | C-WORTHy | EBR/GZR; EBR/GZR/RBV | Yes | No | Lawitz et al., 2015 [5] |
NS3 | K/Q80K+A156A | Subtype 1a | grazoprevir | II | - | C-WORTHy | EBR/GZR; EBR/GZR/RBV | No | Yes | Lawitz et al., 2015 [5] |
NS3 | K/Q80K+D168D | Subtype 1a | grazoprevir | II | - | Pooled study of multiple trials: NCT01710501; NCT01716156 | IFN/RBV/GZR | No | Yes | Bonsall et al., 2018 [8] |
NS5A | Q30H | Subtype 1a | daclatasvir | I | - | NCT01492504 | DCV/ASV; DCV/ASV/BCV; DCV/ASV/PR; DCV/PR; SOF/DCV | No | Yes | Reddy et al., 2018 [14] |
1450 | - | - | - | - | Gao et al., 2010 [15] | |||||
> 80 | - | - | - | - | Gottwein et al., 2018 [16] | |||||
- | Retrospective epidemiological study (Europe) | SOF/DCV | No | Yes | Dietz et al., 2018 [17] | |||||
1477 | - | - | - | - | Fridell et al., 2011 [18] | |||||
- | Phase I monotherapy | DCV mono | No | Yes | Fridell et al., 2011 [18] | |||||
elbasvir | I | 4 - 79 | - | - | - | - | Gottwein et al., 2018 [16] | |||
6 | - | - | - | - | Liu et al., 2015 [19] | |||||
7.50 | - | - | - | - | Coburn et al., 2013 [20] | |||||
6 | - | - | - | - | Lahser et al., 2016 [6] | |||||
- | Pooled study of multiple trials: C-EDGE CO-INFECTION; C-EDGE TE; C-EDGE TN; C-SALVAGE; C-SURFER; C-WORTHy | EBR/GZR; EBR/GZR/RBV | Yes | No | Komatsu et al., 2017 [1] | |||||
6 - 8 | - | - | - | - | Komatsu et al., 2017 [1] | |||||
- | Pooled study of multiple trials: C-EDGE CO-INFECTION; C-EDGE TE; C-EDGE TN; C-SALVAGE; C-SURFER; C-WORTHy | EBR/GZR; EBR/GZR/RBV | Yes | No | Jacobson et al., 2017 [21] | |||||
ledipasvir | I | - | Retrospective epidemiological study (Europe) | SOF/LDV | No | Yes | Dietz et al., 2018 [17] | |||
131.90 - 234.50 | - | - | - | - | Wyles et al., 2017 [22] | |||||
- | Pooled study of multiple trials: ELECTRON; ION-1; ION-2; ION-3; LONESTAR | SOF/LDV; SOF/LDV/RBV | Yes | Yes | Wyles et al., 2017 [22] | |||||
ombitasvir | I | - | Retrospective real world study | PTV/r/OBV/DSV | No | Yes | Dietz et al., 2018 [17] | |||
> 100 | - | - | - | - | Dietz et al., 2018 [17] | |||||
3 | - | - | - | - | Krishnan et al., 2015 [23] | |||||
velpatasvir | - | 2.30 | - | - | - | - | Lawitz et al., 2016 [24] | |||
NS5A | Q30H+Y93H | Subtype 1a | daclatasvir | II | 92217 | - | - | - | - | Fridell et al., 2010 [25] |
93136 | - | - | - | - | Fridell et al., 2011 [18] | |||||
elbasvir | I | - | C-WORTHy | EBR/GZR; EBR/GZR/RBV | Yes | No | Sulkowski et al., 2015 [26] | |||
- | C-EDGE TE | EBR/GZR; EBR/GZR/RBV | No | Yes | Kwo et al., 2017 [2] | |||||
ledipasvir | I | - | RESCUE | SOF/LDV; SOF/LDV/RBV | No | Yes | Tam et al., 2018 [27] | |||
- | Pooled study of multiple trials: ELECTRON; ION-1; ION-2; ION-3; LONESTAR | SOF/LDV | Yes | Yes | Wyles et al., 2017 [22] | |||||
23150 - 46771.80 | - | - | - | - | Wyles et al., 2017 [22] | |||||
pibrentasvir | II | - | Magellan-1, Part 2 | GLE/PIB | Yes | No | Poordad et al., 2018 [28] | |||
velpatasvir | I | 2835 | - | - | - | - | Lawitz et al., 2016 [24] | |||
- | ASTRAL-4 | SOF/VEL | Yes | No | Curry et al., 2015 [29] | |||||
NS5A | Y93H | Subtype 1a | daclatasvir | I | - | NCT01492504 | DCV/ASV; DCV/ASV/BCV; DCV/ASV/PR; DCV/PR; SOF/DCV | No | Yes | Reddy et al., 2018 [14] |
> 1000 | - | - | - | - | Gottwein et al., 2018 [16] | |||||
5367 | - | - | - | - | Fridell et al., 2010 [25] | |||||
5432 | - | - | - | - | Fridell et al., 2011 [18] | |||||
- | Phase I monotherapy | DCV mono | No | Yes | Fridell et al., 2011 [18] | |||||
elbasvir | I | - | C-SURFER | EBR/GZR | Yes | No | Bruchfeld et al., 2017 [30] | |||
> 1000 | - | - | - | - | Gottwein et al., 2018 [16] | |||||
600 | - | - | - | - | Coburn et al., 2013 [20] | |||||
220 | - | - | - | - | Liu et al., 2015 [19] | |||||
220 | - | - | - | - | Lahser et al., 2016 [6] | |||||
ledipasvir | I | - | Retrospective epidemiological study (Europe) | SOF/LDV | No | Yes | Dietz et al., 2018 [17] | |||
- | Pooled study of multiple trials: ELECTRON; ION-1; ION-2; ION-3; LONESTAR | SOF/LDV; SOF/LDV/RBV | Yes | Yes | Wyles et al., 2017 [22] | |||||
1073.60 - 2279.80 | - | - | - | - | Wyles et al., 2017 [22] | |||||
ombitasvir | II | 41383 | - | - | - | - | Krishnan et al., 2015 [23] | |||
pibrentasvir | I | 6.70 | - | - | - | - | Ng et al., 2017 [31] | |||
- | Magellan-1, Part 2 | GLE/PIB | No | Yes | Poordad et al., 2018 [28] | |||||
velpatasvir | I | 609.10 | - | - | - | - | Cheng et al., 2013 [32] | |||
80 - 999 | - | - | - | - | Gottwein et al., 2018 [16] | |||||
609.10 | - | - | - | - | Lawitz et al., 2016 [24] | |||||
609 | Pooled study of multiple trials: ASTRAL-1; ASTRAL-2; ASTRAL-3; ASTRAL-5; POLARIS-2; POLARIS-3 | SOF/VEL | No | Yes | Hezode et al., 2018 [33] | |||||
- | POLARIS-4 | SOF/VEL | No | Yes | Bourlière et al., 2017 [34] |
Virus protein | Polymorphism | Notes |
---|---|---|
NS5A | K24K+M28M | Associated with resistance in other subtypes of genotype 1 |
NS5A | M28M | Associated with resistance in other subtypes of genotype 1 |
NS5A | M28M+Y93H | Associated with resistance in other subtypes of genotype 1 |
NS5A | H54H+Y93H | Associated with resistance in other subtypes of genotype 1 |
NS5B | I585V | Associated with resistance in other subtypes of genotype 1 |
NS3 | K/Q80K+I170I | Associated with resistance in genotypes other than genotype 1 |
NS3 | I132I+I170I | Associated with resistance in genotypes other than genotype 1 |
NS3 | I170I | Associated with resistance in genotypes other than genotype 1 |
NS5A | M28M+Q30H | Associated with resistance in genotypes other than genotype 1 |
NS5A | A92A+Y93H | Associated with resistance in genotypes other than genotype 1 |
Precursor polyprotein | 100% |
Core | 100% |
E1 | 100% |
E2 | 100% |
p7 | 100% |
NS2 | 100% |
NS3 | 100% |
NS4A | 100% |
NS4B | 100% |
NS5A | 100% |
NS5B | 100% |
GLUE engine version | 1.1.50 |
HCV project version | 0.1.60 |
PHE drug resistance extension version | 0.1.31 |
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